Chapter Review

Key Terms

Terms in bold are defined in the glossary.

Problems

The sequence of amino acids in oxytocin is as follows: H 3 N bonded to C y s – T y r – red highlighted I l e – G l n – A s n – C y s – P r o – red highlighted L e u – G l y – C double bonded to O above and bonded to N H 2 to the right. The two C y s amino acids are bonded to yellow highlighted S above and these two S atoms are bonded together, forming a loop above the main chain. Vasopressin is similar except that red highlighted P h e is substituted for I l e and red highlighted A r g is substituted for L e u.

Data Analysis Problem

  • 21. Cloning the Sulfonylurea Receptor of the Pancreatic β Cell Glyburide, a member of the sulfonylurea family of drugs, is used to treat type 2 diabetes. It binds to and closes the ATP-gated K+upper K Superscript plus channel shown in Figures 23-26 and 23-27.

    Glyburide: A benzene ring has an upper left vertex bonded to C l, a lower right vertex bonded to O C H 3, and an upper right vertex bonded to C double boned to O above and further bonded to N H C H 2 C H 2 to the right bonded to the left side vertex of a benzene ring with its right side vertex bonded to S double bonded to O above and below and bonded to N H to the right further bonded to C to the upper right double bonded to O above and bonded to N H to the lower right further bonded to the left side vertex of a six-membered ring to the right.
    1. Given the mechanism shown in Figure 23-27, would treatment with glyburide result in increased or decreased insulin secretion by pancreatic β cells? Explain your reasoning.
    2. How does treatment with glyburide help reduce the symptoms of type 2 diabetes?
    3. Would you expect glyburide to be useful for treating type 1 diabetes? Explain your answer.

      Aguilar-Bryan and coauthors (1995) cloned the gene for the sulfonylurea receptor (SUR) portion of the ATP-gated K+upper K Superscript plus channel from hamsters. The research team went to great lengths to ensure that the gene they cloned was, in fact, the SUR-encoding gene. Here we explore how it is possible for researchers to demonstrate that they have cloned the gene of interest rather than another gene.

      The first step was to obtain pure SUR protein. As was already known, drugs such as glyburide bind SUR with very high affinity (Kd<10nM)left-parenthesis upper K Subscript d Baseline less-than 10 nM right-parenthesis, and SUR has a molecular weight of 140 to 170 kDa. Aguilar-Bryan and coworkers made use of the high-affinity glyburide binding to tag the SUR protein with a radioactive label that would serve as a marker to purify the protein from a cell extract. First, they made a radiolabeled derivative of glyburide, using radioactive iodine (125I)left-parenthesis Superscript 125 Baseline upper I right-parenthesis:

      [Superscript 125 end superscript I] 5-iodo-2-hydroxyglyburide: A benzene ring has an upper left vertex bonded to red highlighted I superscript 125 end superscript, a lower right vertex bonded to O H, and an upper right vertex bonded to C double bonded to O above and further bonded to N H C H 2 C H 2 to the right bonded to the left side vertex of a benzene ring with its right side vertex bonded to S double bonded to O above and below and bonded to N H to the right further bonded to C to the upper right double bonded to O above and bonded to N H to the lower right further bonded to the left side vertex of a six-membered ring to the right.
    4. In preliminary studies, the 125ISuperscript 125 Baseline upper I-labeled glyburide derivative (hereafter, [125I]left-bracket Superscript 125 Baseline upper I right-bracketglyburide) was shown to have the same Kdupper K Subscript d and binding characteristics as unaltered glyburide. Why was it necessary to demonstrate this? (What alternative possibilities did it rule out?)

      Even though [125I]left-bracket Superscript 125 Baseline upper I right-bracketglyburide bound to SUR with high affinity, a significant amount of the labeled drug would probably dissociate from the SUR protein during purification. To prevent this, [125I]left-bracket Superscript 125 Baseline upper I right-bracketglyburide had to be covalently cross-linked to SUR. There are many methods for covalent cross-linking; Aguilar-Bryan and coworkers used UV light. When aromatic molecules are exposed to short-wave UV, they enter an excited state and readily form covalent bonds with nearby molecules. By cross-linking the radiolabeled glyburide to the SUR protein, the researchers could simply track the 125ISuperscript 125 Baseline upper I radioactivity to follow SUR through the purification procedure.

      The research team treated hamster HIT cells (which express SUR) with [125I]left-bracket Superscript 125 Baseline upper I right-bracketglyburide and UV light, purified the 125ISuperscript 125 Baseline upper I-labeled 140 kDa protein, and sequenced its 25 residue amino-terminal segment; they found the sequence PLAFCGTENHSAAYRVDQGVLNNGC. The investigators then generated antibodies that bound to two short peptides in this sequence, one binding to PLAFCGTE and the other to HSAAYRVDQGV, and showed that these antibodies bound the purified 125ISuperscript 125 Baseline upper I-labeled 140 kDa protein.

    5. Why was it necessary to include this antibody-binding step?

      Next, the researchers designed PCR primers based on the sequences above, and then cloned a gene from a hamster cDNA library that encoded a protein with these sequences (see Chapter 9 on biotechnology methods). The cloned putative SUR cDNA hybridized to an mRNA of the appropriate length that was present in cells known to contain SUR. The putative SUR cDNA did not hybridize to any mRNA fraction of the mRNAs isolated from hepatocytes, which do not express SUR.

    6. Why was it necessary to include this putative SUR cDNA–mRNA hybridization step?

      Finally, the cloned gene was inserted into and expressed in COS cells, which do not normally express the SUR gene. The investigators mixed these cells with [125I]left-bracket Superscript 125 Baseline upper I right-bracketglyburide, with or without a large excess of unlabeled glyburide, exposed the cells to UV light, and measured the radioactivity of the 140 kDa protein produced. Their results are shown in the table.

      Experiment

      Cell type

      Added putative SUR cDNA?

      Added excess unlabeled glyburide?

      125ISuperscript bold 125 Baseline bold upper I label in 140 kDa protein

      1

      HIT

      No  

      No  

      + + +

      2

      HIT

      No  

      Yes

      3

      COS

      No  

      No  

      4

      COS

      Yes

      No  

      + + +

      5

      COS

      Yes

      Yes

    7. Why was no 125ISuperscript 125 Baseline upper I-labeled 140 kDa protein found in experiment 2?
    8. How would you use the information in the table to argue that the cDNA encoded SUR?
    9. What other information would you want to collect to be more confident that you had cloned the SUR gene?

Reference

  • Aguilar-Bryan, L., C.G. Nichols, S.W. Wechsler, J.P. Clement, IV, A.E. Boyd, III, G. González, H. Herrera-Sosa, K. Nguy, J. Bryan, and D.A. Nelson. 1995. Cloning of the β cell high-affinity sulfonylurea receptor: a regulator of insulin secretion. Science 268:423–426.