Index

Symbols

--flirt-params dti_flirt.py command line option --help convert_dicoms.py command line option dti_flirt.py command line option --in-dir convert_dicoms.py command line option --overwrite dti_flirt.py command line option --progress convert_dicoms.py command line option dti_flirt.py command line option

-d dti_flirt.py command line option -f dti_flirt.py command line option -h convert_dicoms.py command line option dti_flirt.py command line option -i convert_dicoms.py command line option dti_flirt.py command line option

_

__weakref__ (support_tools.fsreconall_stage1.InvalidJsonInput attribute)

B

built-in function read_credentials()

C

convert_dicoms() (in module support_tools.convert_dicoms) convert_dicoms.py command line option --help --in-dir --progress -h -i

copy_dirs() (in module support_tools.copy_dirs) create_bin_condor_job() (in module support_tools.condor) create_freesurfer_condor_job() (in module support_tools.condor) create_fsl_condor_job() (in module support_tools.condor) create_mysql_connection() (in module support_tools.mysql) create_python_condor_job() (in module support_tools.condor) create_python_venv_condor_job() (in module support_tools.condor)

D

DoDelete() (in module support_tools.RestToolbox) DoGet() (in module support_tools.RestToolbox) DoPost() (in module support_tools.RestToolbox) DoPut() (in module support_tools.RestToolbox) dti_flirt() (in module support_tools.dti_flirt) dti_flirt.py command line option --flirt-params --help --overwrite --progress -d -f -h -i

E

evaluate_raw_file_transfer() (in module support_tools.evaluate_raw_file_transfer)

F

feat_full_firstlevel() (in module support_tools.feat_full_firstlevel) flirt_pngappend() (in module support_tools.flirt_pngappend)

fsreconall_stage1() (in module support_tools.fsreconall_stage1) fsreconall_stage2() (in module support_tools.fsreconall_stage2)

G

get_bids_filename() (in module support_tools.bids)

get_bids_labels() (in module support_tools.bids) get_scan_id() (in module support_tools.get_scan_id)

I

InvalidJsonInput

M

module support_tools.bids support_tools.condor support_tools.convert_dicoms support_tools.copy_dirs support_tools.dti_flirt support_tools.evaluate_raw_file_transfer support_tools.feat_full_firstlevel support_tools.flirt_pngappend support_tools.fsreconall_stage1 support_tools.fsreconall_stage2 support_tools.get_scan_id support_tools.mysql support_tools.prepare_examcard_html support_tools.remove_dirs support_tools.RestToolbox

P

prepare_examcard_html() (in module support_tools.prepare_examcard_html)

Q

query_file() (in module support_tools.mysql)

query_source_file() (in module support_tools.mysql)

R

read_credentials() built-in function

remove_dirs() (in module support_tools.remove_dirs)

S

sql_check_table_exists() (in module support_tools.mysql) sql_create_project_tables() (in module support_tools.mysql) sql_multiple_query() (in module support_tools.mysql) sql_query() (in module support_tools.mysql) sql_query_dir_check() (in module support_tools.mysql) sql_query_dirs() (in module support_tools.mysql) sql_table_insert() (in module support_tools.mysql) sql_table_remove() (in module support_tools.mysql) support_tools.bids module support_tools.condor module support_tools.convert_dicoms module support_tools.copy_dirs module support_tools.dti_flirt module support_tools.evaluate_raw_file_transfer module

support_tools.feat_full_firstlevel module support_tools.flirt_pngappend module support_tools.fsreconall_stage1 module support_tools.fsreconall_stage2 module support_tools.get_scan_id module support_tools.mysql module support_tools.prepare_examcard_html module support_tools.remove_dirs module support_tools.RestToolbox module