:topic: Custom Support Tools

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CoNNECT Support Tools
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Several custom support tools have been created to aid in the batch processing. These tools support parallel processing via HTCondor and SGE implemented in the custom batch processing 
described in the previous section.


.. note:: FIGURE TO BE INSERTED

.. include:: bids_commands.rst

.. include:: convert_dicoms.rst

.. include:: create_fsl_condor_job.rst

.. include:: create_python_condor_job.rst

.. include:: flirt.rst

.. include:: flirt_pngappend.rst

.. include:: get_dir_identifiers.rst

.. include:: get_scan_id.rst

.. include:: get_spec_base.rst

.. include:: mysql_commands.rst

.. include:: read_credentials.rst